Agricultural Contributed Datasets and Analyses
Rotylenchulus reniformis (RREN1.0) genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_001026735.1)
Description: The 314 Mb reniform nematode genome assembly version RREN1.0.
Associated Data: WGS INSDC: LDKF00000000.1
Publication(s): A genomic resource for the sedentary semi-endoparasitic reniform nematode, Rotylenchulus reniformis Linford & Oliveira. Journal of Nematology 51:1-2 (doi.org/10.21307/jofnem-2019-013)
Rotylenchulus reniformis life stage specific transcriptomes
Database (accession): NCBI TSA (multiple accessions)
Description: The transcriptomes of the reniform nematode life stages. Publication(s): Five life stage-specific transcriptome assemblies for the reniform nematode, Rotylenchulus reniformis Linford & Oliveira (doi.org/10.21307/jofnem-2018-053)
| Life Stage | TSA ACCESSION | SRA ACCESSIONS |
|---|---|---|
| EGG | GGVV01000000 | SRR2062637,SRR2062638,SRR2062654 |
| J2 | GGVO01000000 | SRR2060636,SRR2060645,SRR2060671 |
| J3 | GGVP01000000 | SRR2060629,SRR2060633,SRR2060635 |
| VA | GGVQ01000000 | SRR2062637,SRR2062637,SRR2062637 |
| SF | GGVR01000000 | SRR2060223,SRR2060234,SRR2060596 |
Candidatus Cardinium hertigii strain cHgTN10 genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_003176915.1)
Description: The genomic assembly of the endosymbiont Candidatus Cardinium hertigii.
Associated Data: GenBank: (CP029619.1)
Xanthomonas citri pv. malvacearum strain MSCT genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_001719145.1)
Description: The genomic assembly of bacteria Xanthomonas citri pv. malvacearumstrain MSCT.
Causal agent of cotton bacterial blight.
Burkholderia pyrrocinia strain LYC2 genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_000743695.1)
Description: The genome of the bacteria B. pyrrocinia strain LYC2 genome.
Lecanosticta acicola genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_002441625.1)
Description: The sequencing of the fungal pathogen L. acicola isolate B3_MdHEF.
Causal agent of brown spot needle blight.
Serratia marcescens genome sequencing and assembly
Database (accession): NCBI Genome /NCBI Assembly (GCA_001417865.2)
Description: The sequencing of the bacterial pathogen S. marcescens strain B3R3.
Causal agent of corn whirl rot.
Lygus lineolaris Salivary Gland Transcriptome or Gene expression
Database (accession): NCBI TSA (GDAW00000000.1)
Description: The transcriptome of the Tarnished Plant Bugs salivary gland.
Pyrrhocoris apterus Salivary Gland Transcriptome or Gene expression
Database (accession): NCBI TSA (GFOX00000000.1)
Description: The transcriptome of the European firebug salivary gland.