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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Welcome
About me
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Posts
Future Blog Post
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Blog Post number 4
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This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
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Blog Post number 2
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Blog Post number 1
Published:
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portfolio
Agricultural Contributed Datasets and Analyses
publicly available datasets
Medical Contributed Datasets and Analyses
publicly available datasets
publications
The application of a developmental genomics approach to study the resistant reaction of soybean to the soybean cyst nematode
Published in NEMATROPICA, 2010
The resistant reactions of soybean to the soybean cyst nematode.
Recommended citation: Klink VP, Lawrence GW, Matsye PD, Showmaker KC. 2010 The application of a developmental genomics approach to study the resistant reaction of soybean to the soybean cyst nematode. Nematropica 40:1-11
Quantitative field testing Rotylenchulus reniformis DNA from Metagenomic Samples Isolated Directly from Soil
Published in PLoS ONE, 2011
A quantitative PCR procedure of the detection of Rotylenchulus reniformis directly from soil
Recommended citation: Showmaker KC, Lawrence GW, Lu S, Balbalian C, Klink VP. 2011 Quantitative field testing Rotylenchulus reniformis DNA from Metagenomic Samples Isolated Directly from Soil. PLoS ONE https://doi.org/10.1371/journal.pone.0028954
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Published in Nature, 2012
Gold Standard Cotton Genome
Recommended citation: Paterson et al (including Showmaker KC).2012 Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature. 492 423-427 https://doi.org/10.1371/journal.pone.0028954
The pqqC gene is essential for antifungal activity of Pseudomonas kilonensis JX22 against Fusarium oxysporum sp. Lycopersici
Published in FEMS Microbiology Letters, 2014
antifungal activity
Recommended citation: Xu Ji, Deng P, Showmaker KC, Wang Hui, Baird S, Lu S. The pqqC gene is essential for antifungal activity of Pseudomonas kilonensis JX22 against Fusarium oxysporum sp. Lycopersici 2014 FEMS Microbiology Letters. 353(2) doi.org/10.1111/1574-6968.12411
Transcriptomic Dissection of the Rice - Burkholderia glumae Interaction.
Published in BMC Genomics, 2014
plant pathology
Recommended citation: Magbanua ZM, Arick M, Buza T, Hsu CY, Showmaker KC, Chouvarine P, Deng P, Lu S. 2014 Transcriptomic Dissection of the Rice - Burkholderia glumae Interaction. BMC Genomics. https://doi.org/10.1371/journal.pone.0028954
Draft Genome Sequence of Burkholderia pyrrocinia Lyc2, a Biological Control Strain That Can Suppress Multiple Plant Microbial Pathogens
Published in Genome Announcements, 2014
A quantitative PCR procedure of the detection of Rotylenchulus reniformis directly from soil
Recommended citation: Wang X, Showmaker KC, Yu X, Bi T, Hsu C, Baird SM, Peterson DG, Li X, Lu S. 2014 Draft Genome Sequence of Burkholderia pyrrocinia Lyc2, a Biological Control Strain That Can Suppress Multiple Plant Microbial Pathogens. Genome Announcements. 2(5): e00991-14 doi.org/10.1128/genomeA.00991-14
Insight into the salivary gland transcriptome of Lygus lineolaris (Palisot de Beauvois)
Published in PLoS ONE, 2016
Lygus lineolaris salivary gland transcriptome .
Recommended citation: Showmaker KC, Bednářová A, Gresham C. Hsu C, Peterson DG, Krishnan N. (2016) Insight into the salivary gland transcriptome of Lygus lineolaris (Palisot de Beauvois). PLoS ONE 11(1): e0147197 https://doi.org/10.1371/journal.pone.0147197
Comparative genome-wide analysis reveals that Burkholderia contaminans MS14 possesses multiple antimicrobial biosynthesis genes but not major genetic loci required for pathogenesis
Published in Microbiologyopen, 2016
Recommended citation: Deng P, Wang X, Baird SM, Showmaker KC, Smith L, Peterson DG, Lu S (2016). Comparative genome-wide analysis reveals that Burkholderia contaminans MS14 possesses multiple antimicrobial biosynthesis genes but not major genetic loci required for pathogenesis. Microbiologyopen 5(3):353-69. https://doi.org/10.1002/mbo3.333
Characterization of Fenoxaprop-P-Ethyl–Resistant Junglerice (Echinochloa colona) from Mississippi
Published in Weed Science, 2017
Recommended citation: Wright AA, Nandula VK, Grier L, Showmaker KC, Bond JA , Peterson DG, Ray JD, and Shaw DR (2017) Characterization of Fenoxaprop-P-Ethyl–Resistant Junglerice (Echinochloa colona) from Mississippi. Weed Science 64(4):588-595.
The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain
Published in Standards in Genomic Sciences, 2017
Recommended citation: Showmaker KC, Arick MA, Hsu C, Martin BE, Wang X, Wubben MJ, Nichols RL, Allen TW, Peterson DG, and Lu S. (2017) The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain. Standards in Genomic Sciences 12[Extended Genome Report] https://doi.org/10.1186/s40793-017-0253-3
The Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) endosymbiont Candidatus Cardinium hertigii strain cHgTN10
Published in Genome Announcements, 2018
Recommended citation: Showmaker KC, Walden KK, Fields CJ, Lambert KN and Hudson ME. (2018) The Genome Sequence of the Soybean Cyst Nematode (Heterodera glycines) endosymbiont Candidatus Cardinium hertigii strain cHgTN10. Genome Announcements 6(26): e00624-18 https://doi.org/10.1128/genomea.00624-18
Five life stage-specific transcriptome assemblies for the reniform nematode, Rotylenchulus reniformis Linford & Oliveira
Published in Journal of Nematology, 2018
Recommended citation: Showmaker KC, Sanders WS, Eves-van den Akker S, Martin BE, Callahan FE, Peterson DG, Wubben MJ. (2018) Five life stage-specific transcriptome assemblies for the reniform nematode, Rotylenchulus reniformis Linford & Oliveira. Journal of Nematology 50 (4): 529-530 https://doi.org/10.21307/jofnem-2018-053
A genomic resource for the sedentary semi-endoparasitic reniform nematode, Rotylenchulus reniformis Linford & Oliveira
Published in Journal of Nematology, 2019
Recommended citation: Showmaker KC, Sanders WS, Eves-van den Akker S, Martin BE, Peterson DG, Wubben MJ. (2019) A genomic resource for the sedentary semi-endoparasitic reniform nematode, Rotylenchulus reniformis Linford & Oliveira. Journal of Nematology 51:1-2 https://doi.org/10.21307/jofnem-2019-013
Superimposed Preeclampsia: Chronology and Expression Unveiled by Temporal Transcriptomic Analysis
Published in Physiological Genomic, 2019
Recommended citation: Maeda KJ, Showmaker KC, Johnson AC, Garret MR, Sasser JM. (2019) Spontaneous Superimposed Preeclampsia: Chronology and Expression Unveiled by Temporal Transcriptomic Analysis. Physiol Genomics 51: 342–355 https://doi.org/10.1152/physiolgenomics.00020.2019
Whole Genome Sequencing and Novel Candidate Genes for CAKUT and Altered Nephrogenesis in the HSRA Rat
Published in Physiological Genomics, 2020
Recommended citation: Showmaker KC, Cobb M, Johnson AC, Garret MR. (2020) Whole Genome Sequencing and Novel Candidate Genes for CAKUT and Altered Nephrogenesis in the HSRA Rat. Physiological Genomics 52(1):56-70 https://doi.org/10.1152/physiolgenomics.00112.2019
Loss of Arhgef11 in the Dahl Salt-Sensitive Rat Protects Against Hypertension-Induced Renal Injury
Published in Hypertension, 2020
Recommended citation: Johnson AC, Wenjie W, Attipoe EM, Sasser JM, Taylor EB, Showmaker KC, Kyle KB, Lindsey ML, Garret MR. (2020) Loss of Arhgef11 in the Dahl Salt-Sensitive Rat Protects Against Hypertension-Induced Renal Injury. Hypertension 75: 1012–1024. https://doi.org/10.1161/HYPERTENSIONAHA.119.14338
Endothelial cell disruption drives increased blood-brain barrier permeability and cerebral edema in the Dahl SS/jr rat model of superimposed preeclampsia
Published in American Journal of Physiology-Heart and Circulatory Physiolog, 2021
Recommended citation: Maeda KJ, McClung DM, Showmaker KC, Warrington JP, Ryan MJ, Garret MR, Sasser JM. (2021) Endothelial cell disruption drives increased blood-brain barrier permeability and cerebral edema in the Dahl SS/jr rat model of superimposed preeclampsia. Am J Physiol Heart Circ Physiol. 320: H535–H548 PMID: 33275518 https://doi.org/10.1152/ajpheart.00383.2020
Single cell RNA sequencing reveals ferritin as a key mediator of autoimmune pre-disposition in a mouse model of systemic lupus erythematosus
Published in Scientific Report, 2021
Recommended citation: Younes ST, Showmaker KC, Johnson AC, Ryan MJ, Garret MR. (2021) Single cell RNA sequencing reveals ferritin as a key mediator of autoimmune pre-disposition in a mouse model of systemic lupus erythematosus. Scientific Reports 11, 24245 (2021). https://doi.org/10.1038/s41598-021-03649-2
talks
Syncytium Gene Expression in Glycine Max (Pi 88788) Roots Undergoing a Resistant Reaction to the Parasitic Nematode Heterodera glycines
Published:
Syncytium Gene Expression
Genomic Applications in Agriculture
Published:
Genomic Applications in Agriculture
Plant-Parasitic Nematode Feeding Site Development
Published:
Plant-Parasitic Nematode Feeding Site Development
Toward the Development of a Reniform Nematode Gene Atlas
Published:
Toward the Development of a Reniform Nematode Gene Atlas
Advances in DNA Sequencing
Published:
NGS
Biochemistry and Physiology of RNA interference
Published:
Guest lecture on the biochemistry and physiology of RNA interference.
Introduction to Nematology
Published:
Guest lecture on nematology.
Introduction to Molecular Nematology.
Published:
Guest lecture on molecular nematology.
Bioinformatics
Published:
Guest lecture on bioinformatics consulting.
Emerging Technologies for Nematology
Published:
Session Chair and Organizer for the Emerging Technologies for Nematology Session at the Society of Nematology Annual Meeting.
The UMMC Molecular and Genomic Core: A Resource for High Throughput Genome Sequencing in Mississippi
Published:
The UMMC Molecular and Genomic Core: A Resource for High Throughput Genome Sequencing in Mississippi
Data Science
Published:
Chaired the Data Science sessiong a PEARC19.
CyberAmbassadors Training
Published:
Lead a 2-day CyberAmabassadors program at the Mississippi Coding Academies in Biloxi, MS. The training focuses preparing attendees to collaborate effectively with CI-Users and CI-Professionals to advance multidisciplinary, computationally intensive research and service. This program is based upon work supported by the National Science Foundation under grant #1730137.
teaching
Pharmacology Methods
Course, Department of Pharmacology and Toxicology, University of Mississippi Medical Center, 2021
Introduction To Singularity
Workshop, The Jackson Laboratory, 2022
https://thejacksonlaboratory.github.io/intro-to-singularity/index.html
Introduction To BASH
Workshop, The Jackson Laboratory, 2022
Introduction To HPC
Workshop, The Jackson Laboratory, 2022
https://thejacksonlaboratory.github.io/intro-to-hpc/